[1] BRINDLEY P J, MITREVA M, GHEDIN E, et al. Helminth genomics:the implications for human health[J]. PLoS Negl Trop Dis, 2009, 3(10):e538.
[2] TORGERSON P R, MACPHERSON C N L. The socioeconomic burden of parasitic zoonoses:global trends[J]. Vet Parasitol, 2011, 182(1):79-95.
[3] MARGULIES M, EGHOLM M, ALTMAN W E, et al. Genome sequencing in microfabricated high-density picolitre reactors[J]. Nature, 2005, 437(7057):376-380.
[4] MARDIS E R. Next-generation DNA sequencing methods[J]. Annu Rev Genomics Hum Genet, 2008, 9(1):387-402.
[5] DELSENY M, HAN B, HSING Y I. High throughput DNA sequencing:the new sequencing revolution[J]. Plant Sci, 2010, 179(5):407-422.
[6] MUNROE D J, HARRIS T J R. Third-generation sequencing fireworks at Marco Island[J]. Nat Biotechnol, 2010, 28(5):426-428.
[7] SMITH D R, QUINLAN A R, PECKHAM H E, et al. Rapid whole-genome mutational profiling using next-generation sequencing technologies[J]. Genome Res, 2008, 18(10):1638-1642.
[8] The C. elegans Sequencing Consortium. Genome sequence of the nematode C. elegans:a platform for investigating biology[J]. Science, 1998, 282(5396):2012-2018.
[9] HOEW K L, BOLT B J, CAIN S, et al. WormBase 2016:expanding to enable helminth genomic research[J]. Nucleic Acids Res, 2016, 44(D1):D774-D780.
[10] HUANG Y, CHEN W, WANG X, et al. The carcinogenic liver fluke, Clonorchis sinensis:new assembly, reannotation and analysis of the genome and characterization of tissue transcriptomes[J]. PLoS One, 2013, 8(1):e54732.
[11] CWIKLINSKI K, DALTON J P, DUFRESNE P J, et al. The Fasciola hepatica genome:gene duplication and polymorphism reveals adaptation to the host environment and the capacity for rapid evolution[J]. Genome Biol, 2015, 16(1):71.
[12] YOUNG N D, NAGARAJAN N, LIN S J, et al. The Opisthorchis viverrini genome provides insights into life in the bile duct[J]. Nat Commun, 2014, 5(5):4378.
[13] YOUNG N D, JEX A R, LI B, et al. Whole-genome sequence of Schistosoma haematobium[J]. Nat Genet, 2012, 44(2):221-225.
[14] ZHOU Y, ZHENG H J, CHEN X Y, et al. The Schistosoma japonicum genome reveals features of host-parasite interplay[J]. Nature, 2009, 460(7253):345-351.
[15] BERRIMAN M, HAAS B J, LOVERDE P T, et al. The genome of the blood fluke Schistosoma mansoni[J]. Nature, 2009, 460(7253):352-358.
[16] ZHENG H J, ZHANG W B, ZHANG L, et al. The genome of the hydatid tapeworm Echinococcus granulosus[J]. Nat Genet, 2013, 45(10):1168-1175.
[17] TSAI I J, ZAROWIECKI M, HOLROYD N, et al. The genomes of four tapeworm species reveal adaptations to parasitism[J]. Nature, 2013, 496(7443):57-63.
[18] WANG S, WANG S, LUO Y F, et al. Comparative genomics reveals adaptive evolution of Asian tapeworm in switching to a new intermediate host[J]. Nat Commun, 2016, 7:12845.
[19] BENNETT H M, MOK H P, GKRANIA-KLOTSAS E, et al. The genome of the sparganosis tapeworm Spirometra erinaceieuropaei isolated from the biopsy of a migrating brain lesion[J]. Genome Biol, 2014, 15(11):510.
[20] JEX A R, LIU S P, LI B, et al. Ascaris suum draft genome[J]. Nature, 2011, 479(7374):529-533.
[21] ZHU X Q, KORHONEN P K, CAI H M, et al. Genetic blueprint of the zoonotic pathogen Toxocara canis[J]. Nat Commun, 2015, 6:6145.
[22] HUNT V L, TSAI I J, COGHLAN A, et al. The genomic basis of parasitism in the strongyloides clade of nematodes[J]. Nat Genet, 2016, 48(3):299-307.
[23] MCNULTY S N, STRÜBE C, ROSA B A, et al. Dictyocaulus viviparus genome, variome and transcriptome elucidate lungworm biology and support future intervention[J]. Sci Rep, 2016, 6:20316.
[24] LAING R, KIKUCHI T, MARTINELLI A, et al. The genome and transcriptome of Haemonchus contortus, a key model parasite for drug and vaccine discovery[J]. Genome Biol, 2013, 14(8):R88.
[25] SCHWARZ E M, HU Y, ANTOSHECHKIN I, et al. The genome and transcriptome of the zoonotic hookworm Ancylostoma ceylanicum identify infection-specific gene families[J]. Nat Genet, 2015, 47(6):416-422.
[26] TANG Y T, GAO X, ROSA B A, et al. Genome of the human hookworm Necator americanu[J]. Nat Genet, 2014, 46(3):261-269.
[27] LAU Y L, LEE W C, XIA J Q, et al. Draft genome of Brugia pahangi:high similarity between B. pahangi and B. malayi[J]. Parasites Vect, 2015, 8(1):451.
[28] GHEDIN E, WANG S L, SPIRO D, et al. Draft genome of the filarial nematode parasite Brugia malayi[J]. Science, 2007, 317(5845):1756-1760.
[29] GODEL C, KUMAR S, KOUTSOVOULOS G, et al. The genome of the heartworm, Dirofilaria immitis, reveals drug and vaccine targets[J]. Faseb J, 2012, 26(11):4650-4661.
[30] TALLON L J, LIU X, BENNURU S, et al. Single molecule sequencing and genome assembly of a clinical specimen of Loa loa, the causative agent of loiasis[J]. BMC Genomics, 2014, 15(1):788.
[31] FOTH B J, TSAI I J, REID A J, et al. Whipworm genome and dual-species transcriptome analyses provide molecular insights into an intimate host-parasite interaction[J]. Nat Genet, 2014, 46(7):693.
[32] JEX A R, NEJSUM P, SCHWARZ E M, et al. Genome and transcriptome of the porcine whipworm Trichuris suis[J]. Nat Genet, 2014, 46(7):701-706.
[33] MAKEDONKA M, JASMER D P, ZARLENGA D S, et al. The draft genome of the parasitic nematode Trichinella spiralis[J]. Nat Genet, 2011, 43(3):228-235.
[34] KORHONEN P K, POZIO E, LA R G, et al. Phylogenomic and biogeographic reconstruction of the Trichinella complex[J]. Nat Commun, 2016, 7(2):10513.
[35] SMALL S T, REIMER L J, TISCH D J, et al. Population genomics of the filarial nematode parasite wuchereria bancrofti from mosquitoes[J]. Mol Ecol, 2016, 25(7):1465-1477.
[36] 贾万忠, 闫鸿斌, 倪兴维, 等. 蠕虫线粒体基因组研究及其应用进展[J]. 科学通报, 2011, 56(28-29):2358-2372.
JIA W Z, YAN H B, NI X W, et al. Advances in the study of helminth mitochondrial genomes and their associated applications[J]. Chinese Science Bulletin, 2012, 57(1):54-67.
[37] TAYLOR M J, BANDI C, HOERAUF A. Wolbachia. Bacterial endosymbionts of filarial nematodes[J]. Adv Parasitol, 2005, 60:245-284.
[38] SCOTT A L, GHEDIN E, NUTMAN T B, et al. Filarial and Wolbachia genomics[J]. Parasite Immunol, 2012, 34(2-3):121-129.
[39] FOSTER J, GANATRA M, KAMAL I, et al. The Wolbachia genome of Brugia malayi:endosymbiont evolution within a human pathogenic nematode[J]. PLoS Biol, 2005, 3(4):e121.
[40] 艾 琳, 陈韶红, 陈家旭. 重要人兽共患寄生虫功能基因组学研究进展[J]. 中国寄生虫学与寄生虫病杂志, 2011, 29(1):58-63.
AI L, CHEN S H, CHEN J X. Progress on functional genomics of some important zoonotic parasites[J]. Chinese Journal of Parasitology and Parasitic Diseases, 2011, 29(1):58-63. (in Chinese)
[41] WANG X Y, CHEN W J, HUANG Y, et al. The draft genome of the carcinogenic human liver fluke Clonorchis sinensis[J]. Genome Biol, 2011, 12(10):R107.
[42] HU W, YAN Q, SHEN D K, et al. Evolutionary and biomedical implications of a Schistosoma japonicum complementary DNA resource[J]. Nat Genet, 2003, 35(2):139-147.
[43] HARNETT W. Secretory products of helminth parasites as immunomodulators[J]. Mol Biochem Parasitol, 2014, 195(2):130-136.
[44] VILLA-MANCERA A, REYNOSO-PALOMAR A, UTRERA-QUINTANA F, et al. Cathepsin L1 mimotopes with adjuvant Quil A induces a Th1/Th2 immune response and confers significant protection against Fasciola hepatica infection in goats[J]. Parasitol Res, 2014, 113(1):243-250.
[45] ROBINSON M W, DALTON J P, DONNELLY S. Helminth pathogen cathepsin proteases:it's a family affair[J]. Trends Biochem Sci, 2008, 33(12):601-608.
[46] LI M W, LIN R Q, SONG H Q, et al. The complete mitochondrial genomes for three Toxocara species of human and animal health significance[J]. BMC Genomics, 2008, 9(1):224.
[47] KOSINSKI R J. Antigenic variation in trypanosomes:a computer analysis of variant order[J]. Parasitology, 1980, 80(2):343-357.
[48] 王学林, 王心蕊, 吴秀萍, 等. 旋毛虫T668基因转录及表达的时空特性鉴定[J]. 中国兽医学报, 2008, 28(11):1292-1295.
WANG X L, WANG X R, WU X P, et al. Identification of transcription and expression of Trichinella spiralis T668 gene[J]. Chinese Journal of Veterinary Science, 2008, 28(11):1292-1295. (in Chinese)
[49] DEMATTEIS S, ROTTENBERG M, BAZ A. Cytokine response and outcome of infection depends on the infective dose of parasites in experimental infection by Echinococcus granulosus[J]. Parasite Immunol, 2003, 25(4):189-197.
[50] KNAPP J, MILLON L, MOUZON L, et al. Real time PCR to detect the environmental faecal contamination by Echinococcus multilocularis from red fox stools[J]. Vet Parasitol, 2014, 201(1-2):40-47.
[51] HORN D, DURAISINGH M T. Antiparasitic chemotherapy:from genomes to mechanisms[J]. Annu Rev Pharmacol Toxicol, 2014, 54(1):71-94.
[52] RANA A K, MISRA-BHATTACHARYA S. Current drug targets for helminthic diseases[J]. Parasitol Res, 2013, 112(5):1819-1831.
[53] GREGORY W F, MAIZELS R M. Cystatins from filarial parasites:evolution, adaptation and function in the host-parasite relationship[J]. Int J Biochem Cell Biol, 2008, 40(6-7):1389-1398.
[54] WANG J B, CZECH B, CRUNK A, et al. Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles[J]. Genome Res, 2011, 21(9):1462-1477.
[55] HILLYER G V. Fasciola antigens as vaccines against fascioliasis and schistosomiasis[J]. J Helminthol, 2005, 79(3):241-247.
[56] CHANTREE P, PHATSARA M, MEEMON K, et al. Vaccine potential of recombinant cathepsin B against Fasciola gigantica[J]. Exp Parasitol, 2013, 135(1):102-109.
[57] BAIG S, DAMIAN R T, MORALES-MONTOR J, et al. Protection from murine cysticercosis by immunization with a parasite cysteine protease[J]. Microbes Infect, 2006, 8(12-13):2733-2735.
[58] SKUCE P J, REDMOND D L, LIDDELL S, et al. Molecular cloning and characterization of gut-derived cysteine proteinases associated with a host protective extract from Haemonchus contortus[J]. Parasitology, 1999, 119(4):405-412.
[59] LEE J S, KIM I S, SOHN W M, et al. A DNA vaccine encoding a fatty acid-binding protein of Clonorchis sinensis induces protective immune response in Sprague-Dawley Rats[J]. Scand J Immunol, 2006, 63(3):169-176.
[60] TENDLER M, VILAR M M, BRITO C A, et al. Vaccination against schistosomiasis and fascioliasis with the new recombinant antigen Sm14:potential basis of a multi-valent anti-helminth vaccine?[J]. Mem Inst Oswaldo Cruz, 1995, 90(2):255-256.
[61] CARDOSO F C, MACEDO G C, GAVA E, et al. Schistosoma mansoni tegument protein Sm29 is able to induce a Th1-type of immune response and protection against parasite infection[J]. PLoS Negl Trop Dis, 2008, 2(10):e308.
[62] CARDOSO F C, PACÍFICO R N A, MORTARA R A, et al. Human antibody responses of patients living in endemic areas for schistosomiasis to the tegumental protein Sm29 identified through genomic studies[J]. Clin Exp Immunol, 2006, 144(3):382-391. |